is heading

Programme

All lectures and PC labs will take place in the training room of the hotel Belcredi. This is the same hotel where the accomodation is.

There will be a digital projector with a VGA cable as well as a computer with PDF and MS Powerpoint viewers prepared for all lecturers.

Aug 28 (Sunday) Arrival day
19:00-20:00 REGISTRATION at the hotel reception
20:00 Welcome dinner in the venue restaurant
Aug 29 (Monday)
7:00-8:30 Breakfast
REGISTRATION at the hotel reception
8:30-8:50 Michal Kozubek
Welcome
8:50-10:10 Václav Hlaváč
Keynote lecture: Milestones of image analysis and computer vision
10:10-10:30 Coffee break
10:30-12:10 Cris Luengo
Introduction to DIPlib/DIPImage
12:10-14:00 Lunch break
14:00-15:40 Petr Matula
Introduction to mathematical morphology
15:40-16:00 Coffee break
16:00-17:40 Petr Matula
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Cris Luengo, Václav Hlaváč, Jussi Tohka, Carolina Wählby, Petr Matula
Aug 30 (Tuesday)
7:00-8:30 Breakfast
8:30-10:10 Petr Matula
Introduction to mathematical morphology
PC Labs
10:10-10:30 Coffee break
10:30-12:10 Cris Luengo
Measurement
12:10-14:00 Lunch break
14:00-15:40 Cris Luengo
PC Labs
15:40-16:00 Coffee break
16:00-17:40 Student self presentations
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Cris Luengo, Václav Hlaváč, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula
Aug 31 (Wednesday)
7:00-8:30 Breakfast
8:30-10:10 Carolina Wählby
High-throughput screening, heterogeneity in measurements from biomedical image data, and machine learning
10:10-10:30 Coffee break
10:30-12:10 Carolina Wählby
High-throughput screening, heterogeneity in measurements from biomedical image data, and machine learning
12:10-14:00 Lunch break
14:00-15:40 Carolina Wählby
PC Labs
15:40-16:00 Coffee break
16:00-17:40 Cris Luengo
Radon/Hough transform
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Cris Luengo, Václav Hlaváč, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula
Sep 1 (Thursday)
7:00-8:30 Breakfast
8:30-10:10 Jussi Tohka
Markov random fields, graph cuts, and application in MRI
10:10-10:30 Coffee break
10:30-12:10 Jussi Tohka
PC Labs
12:10-14:00 Lunch break
14:00-15:40 Alessandro Foi
Modelling, estimation, and removal of signal-dependent noise
15:40-16:00 Coffee break
16:00-17:40 Alessandro Foi
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Cris Luengo, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula
Sep 2 (Friday)
7:00-8:30 Breakfast
8:30-10:10 Alessandro Foi
Modelling, estimation, and removal of signal-dependent noise
PC Labs
10:10-10:30 Coffee break
10:30-12:10 Arrate Muñoz Barrutia
Image filtering using B-splines
12:10-14:00 Lunch break
14:00-15:40 Arrate Muñoz Barrutia
Image filtering using B-splines
15:40-16:00 Coffee break
16:00-17:40 Arrate Muñoz Barrutia
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Cris Luengo, Arrate Muñoz-Barrutia, Alessandro Foi
Sep 3 (Saturday)
7:00-8:30 Breakfast
9:00 Trip to Moravian Karst and the visit of Punkva Caves
17:00-18:00 Panel discussion with: Cris Luengo, Karl Rohr, Alessandro Foi, Petr Matula
18:00 Evening party
Sep 4 (Sunday)
7:00-8:30 Breakfast
whole day Free activities - tips for traveling
16:40-17:40 Panel discussion with: Cris Luengo, Karl Rohr, Alessandro Foi, Jan Kybic, Petr Matula
17:40-19:30 Dinner
Sep 5 (Monday)
7:00-8:30 Breakfast
8:30-10:10 Jan Kybic
Image registration
10:10-10:30 Coffee break
10:30-12:10 Jan Kybic
Image registration
12:10-14:00 Lunch break
14:00-15:40 Jan Kybic
PC Labs
15:40-16:00 Coffee break
16:00-17:40 Jan Kybic
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Karl Rohr, Antti Niemistö, Alessandro Foi, Stefan Wörz, Jan Kybic, Petr Matula
Sep 6 (Tuesday)
7:00-8:30 Breakfast
8:30-10:10 Karl Rohr
Tracking and registration for biomedical image analysis
10:10-10:30 Coffee break
10:30-12:10 Stefan Wörz
Model-based segmentation of 3D biomedical images
12:10-14:00 Lunch break
14:00-15:40 Stefan Wörz
Model-based segmentation of 3D biomedical images
PC Labs
15:40-16:00 Coffee break
16:00-17:40 Stefan Wörz
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Stefan Wörz, Petr Matula
Sep 7 (Wednesday)
7:00-8:30 Breakfast
8:30-10:10 Carlos Ortiz de Solórzano
Altas-based image segmentation
10:10-10:30 Coffee break
10:30-12:10 Carlos Ortiz de Solórzano
Altas-based image segmentation
12:10-14:00 Lunch break
14:00-15:40 David Svoboda
Introduction to simulations
15:40-16:00 Coffee break
16:00-17:40 Student poster session
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Etienne Decencière, Stefan Wörz, Petr Matula
Sep 8 (Thursday)
7:00-8:30 Breakfast
8:30-10:10 Etienne Decencière
Image segmentation using MM and application in biomedical imaging
10:10-10:30 Coffee break
10:30-12:10 Etienne Decencière
Image segmentation using MM and application in biomedical imaging
12:10-14:00 Lunch break
14:00-15:40 Etienne Decencière
PC Labs
15:40-16:00 Coffee break
16:00-17:40 Etienne Decencière
PC Labs
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Etienne Decencière, Stefan Wörz, Petr Matula
Sep 9 (Friday)
7:00-8:30 Breakfast
8:30-10:10 Antti Niemistö
High-throughput live cell imaging, bright field segmentation, and tracking
10:10-10:30 Coffee break
10:30-12:10 Antti Niemistö
PC Labs
12:10-14:00 Lunch break
14:00-15:40 Michal Kozubek
Automated 3D confocal cell imaging
15:40-16:00 Coffee break
16:00-16:50 Pavel Matula
Applications of 3D confocal cell imaging
16:50-17:40 Michal Kozubek
Closing
17:40-19:30 Dinner
8:30-17:40 Panel discussion with: Karl Rohr, Antti Niemistö, Etienne Decencière, Stefan Wörz, Petr Matula
Sep 10 (Saturday) Departure day
7:00-8:30 Breakfast

A person is excused from panel discussion during breaks and presentation given by him/her.

is heading

Abstract of the keynote lecture

This introductory lecture to the Biomedical Image Analysis summer school aims at explaining the image processing, analysis and computer vision disciplines from their development-in-time perspective. The concepts, tasks formulations and principal contributions will be mentioned with links to principal contributions. The views of signal processing, image formation physics, human image perception, image processing, image analysis, mathematical morphology, 3D computer vision, image sequences understanding, etc. will be explicated. The links to neighboring disciplines of pattern recognition, machine learning, artificial intelligence, and computer graphics will be mentioned too. The broad view of the discipline, in the presenter's opinion, may help the people entering the field to avoid some mistakes which many of us made before them.

Summer School of Masaryk University 2011
Centre for Biomedical Image Analysis, Faculty of Informatics

Latest updates
The section Programme has been updated with venue information. Aug 26, 2011
The section Travel Information has been updated. Aug 15, 2011
The section Travel Information has been updated. Jul 29, 2011
Added new sections Local Information and Free Time. Jun 29, 2011

The New Town Hall

Courtesy of Z. Kolařík