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CytoPacq PDF Print
Article Index
CytoPacq
Simulated Phenomena
Execution and Downloading
Documentation
Examples
MUCIC - Image Datasets
References
Acknowledgement
History of Changes

Papers

  • TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells, In Image Analysis and Processing - ICIAP 2015, LNCS 9279,  Springer International Publishing, Switzerland, pp 623-634, 2015, ISBN 978-3-319-23230-0, PDF | BibTeX

  • On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy, In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, pp 712-716, 2015, ISBN 978-1-4799-2375-5, BibTeX

  • On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy, In IEEE International Conference on Image Processing, pp 3944-3948, 2014, ISBN 978-1-4799-5750-7, PDF | BibTeX

  • A benchmark for comparison of cell tracking algorithms, Bioinformatics, Volume 30(11), pp 1609-1617, June 2014 PDF | BibTeX

  • Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations. In Image Analysis and Processing - ICIAP 2013, Part II, LNCS 8157.  Berlin, Heidelberg: Springer-Verlag,  pp 429-438, September 2013, ISBN 978-3-642-41183-0 PDF | BibTeX

  • Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. In International Conference on Image Analysis and Recognition - ICIAR 2012, Part II, LNCS 7325, Heidelberg: Springer-Verlag, pp 473-482, 2012, ISBN 978-3-642-31297-7 PDF | BibTeX

  • Efficient Computation of Convolution of Huge Images. In Image Analysys and Processing - ICIAP 2011, Part I, LNCS 6978. Berlin, Heidelberg: Springer-Verlag,  pp 453-462, September 2011, ISBN 978-3-642-24084-3 PDF | BibTeX

  • Generation of 3D Digital Phantoms of Colon Tissue, In International Conference on Image Analysis and Recognition - ICIAR 2011, Part II, LNCS 6754, Berlin, Heidelberg: Springer-Verlag, pp 31-39, June 2011, ISBN 978-3-642-21595-7 PDF | BibTeX

  • Generation of Digital Phantoms of Cell Nuclei and Simulation of Image Formation in 3D Image Cytometry, Cytometry Part A, Volume 75A, Issue 6, pp 494-509, June 2009, ISSN:1552-4922 PDF | BibTeX

  • On Simulating 3D Fluorescent Microscope Images. In Computer Analysis of Images and Patterns, LNCS 4673, Berlin, Heidelberg: Springer-Verlag, pp 309-316, September 2007, ISBN 978-3-540-74271-5 PDF | BibTeX

  • Pseudo-real Image Sequence Generator for Optical Flow Computations. In Scandinavian Conference on Image Analysis - SCIA 2007, LNCS 4522, Heidelberg: Springer-Verlag, pp 976-985, 2007, ISBN 978-3-540-73039-2 PDF | BibTeX

  • On Generating Ground-truth Time-lapse Image Sequences and Flow Fields. In International Conference on Informatics in Control, Automation and Robotics - ICINCO 2007, RA-1, Angers: INSTICC, pp 234-239, 2007, ISBN 978-972-8865-83-2 PDF | BibTeX

Presentations

  • On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy,  SPlab workshop, Brno University of Technology, Brno, Czech Republic,  2013

  • Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy, 11th Meeting of European Light Microscopy Initiative, Alexandroupolis, Greece, 2011

  • CytoPacq – On-line framework for simulating fluorescence microscopy images, Hands-on Image Processing, Robotiker-Tecnalia, Bilbao, Spain, 2009

  • Cytopacq: A web-based toolbox for generation of digital phantoms and simulation of image formation in 3D cell imaging, Focus On Microscopy, Krakow, Poland, April 2009 PDF

  • Simulation of fluorescence image formation in 3D image cytometry, XXIV International Congress of International Society for Analytical Cytology, Budapest, Hungary, 2008

  • Simulation of fluorescence image formation in 3D light microscopy, 8th Meeting of European Light Microscopy Initiative, Davos, Switzerland, 2008



Written by David Svoboda   
Last Updated ( Wednesday, 23 August 2017 )
 
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