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CytoPacq PDF Print
Article Index
Simulated Phenomena
Execution and Downloading
MUCIC - Image Datasets
History of Changes


  • 2015 (March)
    Main features (almost bug fixies):
    + cytopacq: removal of memory leaks
    + acquigen: Poisson noise generator fixed
    + iniparser: input format of configuration INI files modified
    + iniparser: new rules imposed by a new version of Bison and Lex
  • 2013 (June) - version 2.0
    Main features:
    + cytogen: the distribution of objects within the volume of interest can be controlled by the user
    + cytogen: digital phantom (colon tissue) switched into release version
    + optigen: implementation of empiricaly measured quadratic surface defining uneven illumination of the specimen.
    + optigen: implementation of convolution with Neumann boundary condition
    + interface: user notification via e-mail
    + interace: improved logging of errors and warnings
    + interface: simulation process can be iterrupted by a user
    + server: improved stability of the computational kernel
    + already generated datasets are available

  • 2010 (October)
    Main features:
    + New comprehensive documentation released (currently in Czech only).
    + A bug causing the bad image resolution repaired.

  • 2010 (August) - version 1.1
    Main features:
    + New type of digital phantom (colon tissue) - development version.
    + Some sample PSFs redistributed with the source codes.

  • 2010 (April)
    Main features:
    + The user can select the preference of the output image format (ICSv1, ICSv2, 3D-TIFF).
    + The binary mask of the generated digital phantom is available now.

  • 2010 (January)
    Main feature:
    + The support for the manipulation with large images added (fast tiled convolution).

  • 2009 (May)
    Main features:
    + Improved input validation.
    + Larger selection of levels of sub-pixel precision.
    + Intermediate results (images) can be downloaded while the consequentical applications are still in progress.

  • 2009 (March) - version 1.0
    Main features:
    + Enhanced list of available configurations (PSFs).
    + Larger selection of available PSFs (no need for uploading own PSF)
    + Source codes available for free after a registration.
    + All the generated images (digital phantom, ground truth, final synthetic) can be downloaded.
    + Names for all the available components amended.
    + Improved preview of the generated 3D images.

  • 2009 (January)
    Main features:
    + Error logging - in case of failure, the user is informed what had happened.
    + Flashing effect appearing during page reloading eliminated
    + Configuration used for the simulation process can be downloaded.
    + Stable solution regarding server-to-server and client-to-server communication.
    + Extended information panels for cameras, objectives and microscopes.

  • 2008 (October) - version 0.2
    Main features:
    + An improved version of web-based interface released.
    + The user can select from a larger list of cameras, objectives, microscopes, excitation and emission filters.
    + The user can watch intermediate results.

  • 2008 (May)
    Main features:
    + The first version of web-based platform-independent interface.
    + Since all the simulation steps are performed on dedicated server the user is not required to have a powerful PC.
    + A simple web-based interface as compared to the previous console-based version.
    + New digital phantoms available: granulocyte nuclei, microspheres.

  • 2007 (December) - version 0.1
    Main features:
    + This version supported only the generation of HL-60 cell nuclei.
    + Console application
    + Three individual binaries (each for one part of the simulation process) freely available  (licence enclosed) both for Win32 and Linux (kernel 2.6.x) platform.

Written by David Svoboda   
Last Updated ( Wednesday, 23 August 2017 )
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