| Pavel Pátek |
| Thesis topic: Application of MPEG-7 descriptors when analyzing 3D biomedical image data |
| Defence year: 2013, defended |
Supervisor: David Svoboda |
|
| Jan Sládek |
| Thesis topic: Higher-Order Active Contours |
| Defence year: 2013 |
Supervisor: Pavel Matula |
|
| Karel Kříž |
| Thesis topic: Detection of vehicles and evaluation of their states in videosequences acquired from crossroads |
| Defence year: 2013 |
Supervisor: David Svoboda |
|
| Marek Podešva |
| Thesis topic: Optimal segmentation of touching round objects |
| Defence year: 2013 |
Supervisor: Pavel Matula |
|
| Vlastimil Jeřábek |
| Thesis topic: Automation of manuscript reconstruction |
| Defence year: 2013 |
Supervisor: Pavel Matula |
|
| Elena Bastrikova |
| Thesis topic: Image Segmentation Using B-Spline Active Contours |
| Defence year: 2012, defended |
Supervisor: Pavel Matula |
|
| Ivo Peterka |
| Thesis topic: Processing and visualization of geophysical data in archeology |
| Defence year: 2012, defended |
Supervisor: Pavel Matula |
|
| Ondřej Rabiška |
| Thesis topic: Cell nuclei segmentation in confocal microscope images |
| Defence year: 2012, defended |
Supervisor: Pavel Matula |
|
| Pavel Eleder |
| Thesis topic: Analysis of interaction of apoptotic proteins AIF and endonuclease G with nuclear proteins during chromatin degradation |
| Defence year: 2012, defended |
Supervisor: Miroslav Vařecha |
|
| Pavol Paučula |
| Thesis topic: Motion analysis of cockroaches in magnetic field |
| Defence year: 2012, defended |
Supervisor: Pavel Matula |
|
| Tomáš Kotula |
| Thesis topic: SIFT for 3D biomedical tracking |
| Defence year: 2012, defended |
Supervisor: Vladimír Ulman |
|
| Jana Tomšů |
| Thesis topic: Digital Processing Of Music Scores |
| Defence year: 2012 |
Supervisor: Pavel Karas |
|
| Lukáš Skovajsa |
| Thesis topic: GPU-Based Implementation Of Diffusion Filters |
| Defence year: 2011, defended |
Supervisor: Pavel Karas, Pavel Matula |
|
| Karel Štěpka |
| Thesis topic: Automatic cell counting in Bürker chamber |
| Defence year: 2010, defended |
Supervisor: Pavel Matula |
|
| Michal Oravec |
| Thesis topic: Methods for checking the similarity of edge images |
| Defence year: 2010, defended |
Supervisor: David Svoboda |
|
| Roman Stoklasa |
| Thesis topic: Road Detection |
| Defence year: 2010, defended |
Supervisor: Petr Matula |
|
| Stanislav Straka |
| Thesis topic: Minimization of Chan-Vese functional using graph cuts |
| Defence year: 2010, defended |
Supervisor: Ondřej Daněk |
|
| Tomáš Majtner |
| Thesis topic: Image compression |
| Defence year: 2010, defended |
Supervisor: David Svoboda |
|
| Anna Ogrocká |
| Thesis topic: In vivo analysis of telomere dynamics in cells with different mechanisms of lengthening of telomeres |
| Defence year: 2009, defended |
Supervisor: Jana Amrichová |
|
| Daniela Páclová |
| Thesis topic: Function, release, and interactions of apoptotic mitochondrial proteins AIF and endonuclease G |
| Defence year: 2009, defended |
Supervisor: Miroslav Vařecha |
|
| Martin Janík |
| Thesis topic: Automatic processing of 2D orthopaedic data |
| Defence year: 2009, defended |
Supervisor: Pavel Matula |
|
| Ondřej Homola |
| Thesis topic: Generation of phantom biomedical image data |
| Defence year: 2009, defended |
Supervisor: David Svoboda |
|
| Pavel Černohorský |
| Thesis topic: Segmentation of fluorescently stained cells |
| Defence year: 2009, defended |
Supervisor: Pavel Matula |
|
| František Feichtinger |
| Thesis topic: Parametric studies of segmentation methods |
| Defence year: 2008, defended |
Supervisor: Pavel Matula |
|
| Jan Havelka |
| Thesis topic: Nonlinear edge detectors |
| Defence year: 2008, defended |
Supervisor: David Svoboda |
|
| Michaela Potěšilová |
| Thesis topic: CD34+ cells gene expression profiling of patients with CML |
| Defence year: 2008, defended |
Supervisor: Irena Koutná |
|
| Lenka Tesařová |
| Thesis topic: Expression profiling of CD34+ progenitor cells isolated from peripheral blood of patients with lymphoma during ex vivo differentiation |
| Defence year: 2007, defended |
Supervisor: Irena Koutná |
|
| Štěpán Šrubař |
| Thesis topic: Analysis of spectral image data |
| Defence year: 2007, defended |
Supervisor: Michal Kozubek |
|
| Martin Halamíček |
| Thesis topic: Granulometry of biomedical images |
| Defence year: 2007, defended |
Supervisor: Pavel Matula |
|
| Michal Bříza |
| Thesis topic: Estimation of geometric properties of digital objects |
| Defence year: 2007, defended |
Supervisor: Pavel Matula |
|
| Ondřej Daněk |
| Thesis topic: Voxel-based image registration of cells |
| Defence year: 2007, defended |
Supervisor: Petr Matula |
|
| Pavlína Havlíková |
| Thesis topic: Analysis of telomere dynamics in vivo |
| Defence year: 2007, defended |
Supervisor: Jana Amrichová |
|
| Zděněk Ručka |
| Thesis topic: Genomic profiling of pulmonary malignances |
| Defence year: 2007, defended |
Supervisor: Irena Koutná |
|
| Jan Orel |
| Thesis topic: Deconvolution of biomedical images in digital microscopy |
| Defence year: 2006, defended |
Supervisor: Michal Kozubek |
|
| Martin Maška |
| Thesis topic: Image Segmentation Using Fast Approximation of Implicit Active Surfaces |
| Defence year: 2006, defended |
Supervisor: Jan Hubený |
|
| Michal Zimmermann |
| Thesis topic: Fluorescence methods used to study the processes in mammalian cells in vivo |
| Defence year: 2006, defended |
Supervisor: Miroslav Vařecha |
|
| Petra Venigová |
| Thesis topic: The comparative topography of telomeres in human cells with different lengthening mechanism |
| Defence year: 2006, defended |
Supervisor: Jana Amrichová |
|
| Stanislav Stejskal |
| Thesis topic: Epigenetically regulated changes of gene expression in malignant deseases |
| Defence year: 2006, defended |
Supervisor: Irena Koutná |
|
| Zdeněk Hrnčír |
| Thesis topic: Computation of optic flow by using differential methods of Horn&Schunk and Lucas&Kanade. |
| Defence year: 2006, defended |
Supervisor: Vladimír Ulman |
|
| Daša Medříková |
| Thesis topic: Topography of telomeres in human cell nuclei |
| Defence year: 2005, defended |
Supervisor: Jana Amrichová |
|
| Jakub Kulaviak |
| Thesis topic: Modelling and optimization of the light throughput in an optical set-up |
| Defence year: 2005, defended |
Supervisor: Michal Kozubek |
|
| Jakub Zemánek |
| Thesis topic: Extremely small objects segmentation in biomedical images |
| Defence year: 2005, defended |
Supervisor: Michal Kozubek |
|
| Jiří Cvachovec |
| Thesis topic: Elastic registration in micro-axial tomography |
| Defence year: 2005, defended |
Supervisor: Petr Matula |
|
| Marek Kašík |
| Thesis topic: Dual active contours, Image segmentation |
| Defence year: 2005, defended |
Supervisor: David Svoboda |
|
| Petr Krontorád |
| Thesis topic: Segmentation of images aquired by DNA microarrays scaner |
| Defence year: 2005, defended |
Supervisor: Michal Kozubek |
|
| Tomáš Smetana |
| Thesis topic: Pattern recognition in biomedical images using support vector machines |
| Defence year: 2005, defended |
Supervisor: Michal Kozubek |
|
| Vladimír Dvořák |
| Thesis topic: 3D Point-pattern matching |
| Defence year: 2005, defended |
Supervisor: Petr Matula |
|
| Zbyněk Svoboda |
| Thesis topic: Normalization methods in the processing of DNA microarrays |
| Defence year: 2005, defended |
Supervisor: Michal Kozubek |
|
| Jan Hubený |
| Thesis topic: 3D object segmentation using level-set methods |
| Defence year: 2004, defended |
Supervisor: Pavel Matula |
|
| Marek Winkler |
| Thesis topic: Pattern recognition in biomedical images using neural networks |
| Defence year: 2004, defended |
Supervisor: Michal Kozubek |
|
| Pavel Rotek |
| Thesis topic: Cells and chromosomes segmentation using Voronoi diagrams |
| Defence year: 2004, defended |
Supervisor: Michal Kozubek |
|
| Silvie Křivánková |
| Thesis topic: Cell segmentation in biomedical images using genetic algorithms |
| Defence year: 2004, defended |
Supervisor: Michal Kozubek |
|
| Veronika Křížová |
| Thesis topic: Data aproximation with algebraic surfaces |
| Defence year: 2004, defended |
Supervisor: Pavel Matula |
|
| Silvie Dudová |
| Thesis topic: Comparsion of the topographic parameters of centromeres and telomeres in interphase nuclei of human blood cells using FISH |
| Defence year: 2003, defended |
Supervisor: Magdalena Skalníková |
|
| Tomáš Darmovzal |
| Thesis topic: Implicit surfaces, Simplex meshes |
| Defence year: 2003, defended |
Supervisor: David Svoboda |
|
| Ivo Kočvara |
| Thesis topic: Compression of biomedical images using wavelet transform |
| Defence year: 2002, defended |
Supervisor: Petr Matula |
|
| Jiří Hegr |
| Thesis topic: Surface reconstruction using DMS splines |
| Defence year: 2002, defended |
Supervisor: Pavel Matula |
|
| Václav Krpec |
| Thesis topic: Application of Hough transform on biomedical images |
| Defence year: 2002, defended |
Supervisor: Petr Matula |
|
| David Svoboda |
| Thesis topic: Application of deformable models in biomedical image analysis |
| Defence year: 2001, defended |
Supervisor: Pavel Matula |
|
| Jiří Stibor |
| Thesis topic: Finding groups of chromosomes in a digital image |
| Defence year: 2001, defended |
Supervisor: Michal Kozubek |
|
| Miroslav Hebký |
| Thesis topic: Segmentation algorithm watershed and its visualization |
| Defence year: 2001, defended |
Supervisor: Michal Kozubek |
|
| Pavel Hložek |
| Thesis topic: Mapping of topographic parameters of interphase chromosomes in human cell nuclei and relation between these parameters and level of gene expression |
| Defence year: 2001, defended |
Supervisor: Stanislav Kozubek, Irena Koutná |
|
| Radim Chlad |
| Thesis topic: Segmentation of cell nuclei with active contours |
| Defence year: 2001, defended |
Supervisor: Pavel Matula |
|
| Marek Matuš |
| Thesis topic: Deconvolution of biomedical images in digital microscopy |
| Defence year: 2000, defended |
Supervisor: Michal Kozubek |
| Jan Sedlák |
| Thesis topic: Educational application for PA166 course |
| Defence year: 2013, defended |
Supervisor: Pavel Matula |
|
| Luděk Matyska |
| Thesis topic: Simulation of Optical Aberrations in Confocal Microscopy |
| Defence year: 2013, defended |
Supervisor: David Svoboda |
|
| Martin Vlach |
| Thesis topic: Measurement of Cardiac Rhythm Using Video Analysis |
| Defence year: 2013, defended |
Supervisor: Pavel Matula |
|
| Andrej Krejčír |
| Thesis topic: Image reconstruction in digital holographic microscopy on GPU |
| Defence year: 2013 |
Supervisor: Pavel Matula, Pavel Karas |
|
| Ludvík Hájek |
| Thesis topic: Adaptive monitor darkening in laptops with built-in webcam |
| Defence year: 2013 |
Supervisor: David Svoboda |
|
| Petr Sečkář |
| Thesis topic: E-learning tool for Fourier transform |
| Defence year: 2013 |
Supervisor: David Svoboda |
|
| Tomáš Tauer |
| Thesis topic: Graphical user interface for manipulation with wide networks |
| Defence year: 2013 |
Supervisor: David Svoboda |
|
| Jan Polišenský |
| Thesis topic: SW for AD convertor NI USB-6210 |
| Defence year: 2012, defended |
Supervisor: Pavel Matula |
|
| Zdeněk Hruška |
| Thesis topic: Registration of Histological Images |
| Defence year: 2012, defended |
Supervisor: Vladimír Ulman |
|
| David Wiesner |
| Thesis topic: GPU-Based Implementation Of Certain Subroutines Of An Optical Flow Computation |
| Defence year: 2012 |
Supervisor: Pavel Karas, Vladimír Ulman |
|
| Jan Juráň |
| Thesis topic: The Optimization of Convolution Process of Huge Multidimensional Image Data |
| Defence year: 2011, defended |
Supervisor: David Svoboda |
|
| Maroš Gonda |
| Thesis topic: Data Formats PNG and HDF5 and Their Use When Manipulating Biomedical Image Data |
| Defence year: 2011, defended |
Supervisor: Pavel Karas, David Svoboda |
|
| Petra Mazancová |
| Thesis topic: Alternative functions of proteins AIF and endonuclease G |
| Defence year: 2011, defended |
Supervisor: Miroslav Vařecha |
|
| František Veverka |
| Thesis topic: Displaying of information about acquired images in Acquiarium software |
| Defence year: 2010, defended |
Supervisor: Pavel Matula |
|
| Jan Urban |
| Thesis topic: Connecting Morph-M into Matlab using SWIG |
| Defence year: 2010, defended |
Supervisor: Petr Matula |
|
| Jana Matějková |
| Thesis topic: Texture descriptors for biomedical image data |
| Defence year: 2010, defended |
Supervisor: David Svoboda |
|
| Josef Pacula |
| Thesis topic: Connecting Morph-M into Matlab using SWIG |
| Defence year: 2010, defended |
Supervisor: Petr Matula |
|
| Martin Kuric |
| Thesis topic: Embedding of a 3D image viewer into Matlab |
| Defence year: 2010, defended |
Supervisor: Petr Matula |
|
| Matúš Kotry |
| Thesis topic: Cell nuclei segmentation by ellipse fitting |
| Defence year: 2010, defended |
Supervisor: Pavel Matula |
|
| Tomáš Šlimar |
| Thesis topic: Correction of uneven illumination |
| Defence year: 2010, defended |
Supervisor: Pavel Matula |
|
| Miroslav Pokorný |
| Thesis topic: Dummy Acquiarium driver for HW simulation |
| Defence year: 2009, defended |
Supervisor: Pavel Matula |
|
| Pavel Eleder |
| Thesis topic: Interactions of apoptotic mitochondrial proteins AIF and endonuclease G with nuclear proteins during chromatin degradation |
| Defence year: 2009, defended |
Supervisor: Miroslav Vařecha |
|
| Jan Brodina |
| Thesis topic: Effective implementation of basic morphological operations |
| Defence year: 2008, defended |
Supervisor: Petr Matula |
|
| Jan Knotek |
| Thesis topic: Collocalization plug-ins for Acquiarium |
| Defence year: 2008, defended |
Supervisor: Pavel Matula |
|
| Marek Vinkler |
| Thesis topic: C++ library for visualisation of basic models of digital geometry |
| Defence year: 2008, defended |
Supervisor: Pavel Matula |
|
| Andor Pathó |
| Thesis topic: Connecting i3dlib library to Matlab |
| Defence year: 2007, defended |
Supervisor: Pavel Matula |
|
| Anna Ogrocká |
| Thesis topic: Analysis of alternative mechanism of telomere lengthening (ALT) |
| Defence year: 2007, defended |
Supervisor: Jana Amrichová |
|
| Daniela Páclová |
| Thesis topic: Post-transcription gene silencing using siRNA |
| Defence year: 2007, defended |
Supervisor: Miroslav Vařecha |
|
| Jakub Grochol |
| Thesis topic: 3D biomedical image data manipulation |
| Defence year: 2007, defended |
Supervisor: David Svoboda |
|
| Magdalena Dvořáková |
| Thesis topic: Basic principles and utilization of quantitative PCR with respect to oncology diagnostics |
| Defence year: 2007, defended |
Supervisor: Irena Koutná |
|
| Tomáš Skoupil |
| Thesis topic: 3D surface reconstruction using PowerCrust algorithm |
| Defence year: 2007, defended |
Supervisor: Petr Matula |
|
| Daniel Balík |
| Thesis topic: 3D Reconstruction and Visualization of Dental Lamina |
| Defence year: 2006, defended |
Supervisor: Petr Matula |
|
| Jan Havelka |
| Thesis topic: Distance transform algorithms, Optimization |
| Defence year: 2006, defended |
Supervisor: Jan Hubený, David Svoboda |
|
| Jana Pospíšilová |
| Thesis topic: Primary cell cultures |
| Defence year: 2006, defended |
Supervisor: Irena Koutná |
|
| Lenka Holeková |
| Thesis topic: Implementation of BM3D algorithm |
| Defence year: 2006, defended |
Supervisor: Petr Matula |
|
| Lukáš Riedel |
| Thesis topic: Smoothing of binary objects |
| Defence year: 2006, defended |
Supervisor: Pavel Matula |
|
| Michaela Křížová |
| Thesis topic: Main markers of epigenetic regulation and their visualization |
| Defence year: 2006, defended |
Supervisor: Irena Koutná |
|
| František Feichtinger |
| Thesis topic: Module for entering cross-sections |
| Defence year: 2005, defended |
Supervisor: Petr Matula |
|
| Lenka Tesařová |
| Thesis topic: Processing of biological material for cDNA microarrays |
| Defence year: 2005, defended |
Supervisor: Irena Koutná |
|
| Martin Juránek |
| Thesis topic: Implementation of chromatic aberration correction algorithm in C/C++ |
| Defence year: 2005, defended |
Supervisor: Petr Matula |
|
| Pavel Rajňačok |
| Thesis topic: C++ vector graphics library |
| Defence year: 2005, defended |
Supervisor: Pavel Matula |
|
| Vojtěch Štursa |
| Thesis topic: Improvements of volumetric image viewer |
| Defence year: 2005, defended |
Supervisor: Petr Matula |
|
| Zdeněk Ručka |
| Thesis topic: Trends and posibilities of DNA microarrays |
| Defence year: 2005, defended |
Supervisor: Irena Koutná |
|
| Martin Maška |
| Thesis topic: Archive/Restore module for Fish 3.0 system |
| Defence year: 2004, defended |
Supervisor: Pavel Matula |
|
| Michal Zimmermann |
| Thesis topic: Preparation and use of fluorescent fusion proteins in cell biology |
| Defence year: 2004, defended |
Supervisor: Miroslav Vařecha |
|
| Ondřej Daněk |
| Thesis topic: Improvements of volumetric image viewer |
| Defence year: 2004, defended |
Supervisor: Petr Matula |
|
| Pavel Holec |
| Thesis topic: Automatic cutting of movies |
| Defence year: 2004, defended |
Supervisor: Petr Matula |
|
| Petr Černoch |
| Thesis topic: Overview of software for image analysis and processing in optical microskopy |
| Defence year: 2004, defended |
Supervisor: David Svoboda |
|
| Radim Klapka |
| Thesis topic: Fluorescence in situ hybridization |
| Defence year: 2004, defended |
Supervisor: Miroslav Vařecha |
|
| Stanislav Stejskal |
| Thesis topic: The effect of methylation on the chromatin structure |
| Defence year: 2004, defended |
Supervisor: Magdalena Skalníková |
|
| Zdeněk Hrnčíř |
| Thesis topic: Library for the computation of 3D-object characteristics |
| Defence year: 2004, defended |
Supervisor: Jiří Stibor |
|
| Aleš Vlček |
| Thesis topic: Overview of software respecting computing geometry problems |
| Defence year: 2003, defended |
Supervisor: David Svoboda |
|
| Bedřich Michálek |
| Thesis topic: Development of software for digital image processing practicals |
| Defence year: 2003, defended |
Supervisor: Michal Kozubek |
|
| Denisa Píšová |
| Thesis topic: Overview of software usable for volumetrical data reconstruction and visualization |
| Defence year: 2003, defended |
Supervisor: Pavel Matula |
|
| Jakub Kulaviak |
| Thesis topic: Development of software for digital image processing practicals |
| Defence year: 2003, defended |
Supervisor: Michal Kozubek |
|
| Lucie Špičková |
| Thesis topic: Overview of image registration software packages |
| Defence year: 2003, defended |
Supervisor: Petr Matula |
|
| Marek Kašík |
| Thesis topic: 3D edge detection |
| Defence year: 2003, defended |
Supervisor: David Svoboda |
|
| Milan Fikar |
| Thesis topic: Reservation software for the Laboratory of Optical Microscopy |
| Defence year: 2003, defended |
Supervisor: Jiří Stibor |
|
| Ondřej Čech |
| Thesis topic: Overview of software suitable for demonstration of optical microscopy principles |
| Defence year: 2003, defended |
Supervisor: Michal Kozubek |
|
| Petr Veselý |
| Thesis topic: Discrete image transformations |
| Defence year: 2003, defended |
Supervisor: Petr Matula |
|
| Vladimír Dvořák |
| Thesis topic: Prezentation of FISH 3.0 system data via HTML |
| Defence year: 2003, defended |
Supervisor: Pavel Matula |
|
| Martin Vach |
| Thesis topic: Mathematical morphology toolbox in C++ |
| Defence year: 2001, defended |
Supervisor: Petr Matula |
|
| Daniel Navrátil |
| Thesis topic: Transformation of graphical user interface from MS Windows to wxWindows |
| Defence year: 2000, defended |
Supervisor: Pavel Matula |
|
| Jaroslav Dočekal |
| Thesis topic: System for maintaining bibliography with WWW user interface |
| Defence year: 2000, defended |
Supervisor: Petr Matula |
|
| Martin Pitra |
| Thesis topic: System for maintaining bibliography with WWW user interface |
| Defence year: 2000, defended |
Supervisor: Petr Matula |
|
| Jan Schmidt |
| Thesis topic: Development of the web-page of Laboratory of high-resolution cytometry |
| Defence year: 1999, defended |
Supervisor: Michal Kozubek |
|
| David Černý |
| Thesis topic: Visualization of the convolution algorithm |
| Defence year: 1997, defended |
Supervisor: Michal Kozubek |
|
| Michal Politzer |
| Thesis topic: Visualization of the Fourier transform |
| Defence year: 1997, defended |
Supervisor: Michal Kozubek |
