Bachelor and Master Student Research Assistants

• Lucia Dupkaničová
  • Research topic: Development of methods for the automatic analysis of multidimensional images of organoids

Visiting Students and Researchers

• Currently none

Former Staff

• Jana Amrichová

  • Position: Post-doc
  • Research interests: Cell biology, telomere biology, living cells, molecular biology of cancer cells

• Lívia Eiselleová

  • Position: Researcher
  • Research interests: Embryonic stem cell research and nuclear topology

• Tomáš Henych

  • Position: Maintenance of microscopy systems

• Libor Holuša

  • Position: Network administrator

• Marek Kašík

  • Position: Maintenance of microscopy systems
  • Research interests: Application of deconvolution in fluorescence microscopy

• Irena Koutná

  • Position: Researcher
  • Research interests: Cell and tissue engineering, mesenchymal stem cell research

• Petr Krontorád

  • Position: Researcher
  • Research interests: Image/data analysis in microarray imaging

• Petr Mejzlík

  • Position: Researcher
  • Research interests: Effective and correct computations using floating point numbers

• Martina Peterková

  • Position: Researcher
  • Research interests: Gene expression analysis using cDNA microarrays

• Radka Rosická

  • Position: Laboratory assistant

• Klára Schichelová

  • Position: Laboratory assistant

• Jan Skalický

  • Position: Maintenance of microscopy systems

• Magdalena Skalníková

  • Position: Post-doc
  • Research interests: Patterns of histone methylation and acetylation in human interphase nuclei

• Dmitry Sorokin

  • Position: Post-doc / Junior researcher
  • Research interests: Mathematical methods of image processing, image analysis, live cell imaging

• Stanislav Stejskal

  • Position: Post-doc
  • Research interests: Immunohistology, epigenetics, blood cells development, biology of cell nucleus

• Pavel Šimara

  • Position: Researcher
  • Research interests: Induced pluripotent stem cell research, genome integrity

• Renata Taslerová

  • Position: Post-doc
  • Research interests: Molecular biology of cancerogenesis

• Lenka Tesařová

  • Position: Researcher
  • Research interests: Cell and tissue engineering, mesenchymal stem cell research

• Miroslav Vařecha

  • Position: Researcher
  • Research interests: Cell biology, living cells, caspase-independent apoptosis, mitochondria

• Eva Vavrečková

  • Position: Laboratory assistant

Graduated PhD Students

• Karel Štěpka
  • Thesis topic: Detection of Sub-Resolution Spots in Microscopy Images
  • Defence year: 2016, Supervisors: Pavel Matula, Michal Kozubek
• Roman Stoklasa
  • Thesis topic: Semantic-Segmentation of Biomedical Images based on Visual Similarity
  • Defence year: 2016, Supervisors: Petr Matula, David Svoboda
• Tomáš Majtner
  • Thesis topic: Texture-Based Image Description in Fluorescence Microscopy
  • Defence year: 2015, Supervisors: Michal Kozubek, David Svoboda
• Zdeněk Ručka
  • Thesis topic: Studies of cells producing pulmonary surfactant
  • Defence year: 2015, Supervisor: Irena Koutná
• Pavel Karas
  • Thesis topic: Parallelization Strategies for Image-Filtering Algorithms
  • Defence year: 2014, Supervisors: Michal Kozubek, David Svoboda
• Stanislav Stejskal
  • Thesis topic: Expression active regions in the nuclear architecture during granulocytic differentiation
  • Defence year: 2013, Supervisor: Irena Koutná
• Lenka Tesařová
  • Thesis topic: Clonal diversity of T cells in hematooncological patients
  • Defence year: 2012, Supervisor: Irena Koutná
• Ondřej Daněk
  • Thesis topic: Graph Cut Based Image Segmentation in Fluorescence Microscopy
  • Defence year: 2012, Supervisors: Michal Kozubek, Pavel Matula
• Pavel Šimara
  • Thesis topic: Molecular targeted therapy in chronic myeloid leukaemia
  • Defence year: 2012, Supervisor: Irena Koutná
• Martin Maška
  • Thesis topic: Fast level set-like algorithms in fluorescence microscopy
  • Defence year: 2011, Supervisors: Michal Kozubek, Pavel Matula
• Silvie Luisa Brázdilová
  • Thesis topic: Information content analysis in automated fluorescence microscopy
  • Defence year: 2011, Supervisor: Michal Kozubek
• Vladimír Ulman
  • Thesis topic: Fast anisotropic filtering and optical flow in biomedical image analysis
  • Defence year: 2011, Supervisor: Michal Kozubek
• Jan Hubený
  • Thesis topic: Applications of PDE-based image processing in fluorescence microscopy
  • Defence year: 2008, Supervisor: Michal Kozubek
• Eva Jansová
  • Thesis topic: Epigenetic control of gene expression in malignant diseases
  • Defence year: 2005, Supervisor: Stanislav Kozubek
• David Svoboda
  • Thesis topic: Tissue image segmentation using dual active contours
  • Defence year: 2004, Supervisor: Michal Kozubek
• Jana Amrichová
  • Thesis topic: Topography and dynamics of telomeres in normal and malignant cells
  • Defence year: 2003, Supervisor: Stanislav Kozubek
• Pavel Matula
  • Thesis topic: Three-dimensional object reconstruction and its application in cytometry
  • Defence year: 2003, Supervisors: Václav Račanský, Michal Kozubek
• Petr Matula
  • Thesis topic: Image registration and its applications in fluorescence microscopy
  • Defence year: 2003, Supervisors: Václav Račanský, Michal Kozubek
• Renata Taslerová
  • Thesis topic: Topography of genes and chrom. territories in tumor diseases charaterised by specific translocation
  • Defence year: 2003, Supervisor: Stanislav Kozubek
• Irena Koutná
  • Thesis topic: Higher-order chromatin structure of tissue and blood cell nuclei and its relation to gene expression
  • Defence year: 2001, Supervisor: Stanislav Kozubek
• Magdalena Skalníková
  • Thesis topic: Fine structure of higher-order compartments of nuclear chromatin in human blood cells
  • Defence year: 2001, Supervisor: Stanislav Kozubek
• Michal Kozubek
  • Thesis topic: High-resolution cytometry: Hardware approches, image analysis techniques and applications
  • Defence year: 1998, Supervisors: Jaroslav Král, Tony Wilson

Former Bachelor and Master Student Research Assistants

• Katsiarina Morgaenko

  • Research topic: Preparation, annotation and analysis of multidimensional image data

• Jakub Jozef Pálenik

  • Research topic: Hierarchical segmentation of biomedical images using mathematical morphology

Former Visiting Students and Researchers

• Vinayak Pramod Kothari

  • Position: Internship during bachelor studies
  • Research topic: Parallelization strategies on CUDA hardware applied on particular problems from medical image analysis
  • Period of visit: May till July 2017

• Carlos Castilla

  • Position: Visiting PhD student
  • Research topic: Quantification of cell morphology during migration in 3D environment
  • Period of visit: April till July 2016
• Ayush Kumar
  • Position: Internship during bachelor studies
  • Research topic: Development of time-lapse image sequence viewer
  • Period of visit: May till August 2013
• Ketan Bacchuwar
  • Position: Internship during bachelor studies
  • Research topic: Road Detection using Similarity Search
  • Period of visit: May till July 2012
• Sunil Jaiswal
  • Position: Internship during bachelor studies
  • Research topic: Lossless visible watermarking
  • Period of visit: May till June 2011
• Thomas Pengo
  • Position: Visiting PhD student
  • Research topic: Automatic image analysis
  • Period of visit: March till May 2008