Packages

Acquiarium is open source software for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy.

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CytoPacq is an on-line framework for simulating fluorescence microscopy images.

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A templated cross-platform C++ library for 3D image processing

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A cross-platform C++ computer program designed for displaying and inspecting 3D volumetric images.

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A light-weight viewer of 3D+time scientific images

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FTutor1d is a software packages that provide educational tool for 1D frequency analysis and its use in the field of digital image processing.

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FTutor2d is a software packages that provide educational tool for 2D frequency analysis and its use in the field of digital image processing.

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WTutor1d is a software packages that provide educational tool for wavelets over discrete 1D signals.

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WTutor2d is a software packages that provide educational tool for wavelets over discrete 2D images.

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TEM ExosomeAnalyzer is a tool for automatic and semi-automatic detection and segmentation of exosomes in 2D images from TEM.

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Tools and Utilities

ImageJ plugin for Cell Segmentation

This software is designed to process transmission electron microscopy images containing cells.

HEp-2 Cells Classifier

This software is designed to process transmission electron microscopy images containing cells.

Fourier Descriptors in 2D

This software serves as an education tool for Fourier descriptors.

AOGM Measure

AOGMMeasure is a standalone console application intended for computing a cell tracking accuracy measure based on matching acyclic oriented graphs.

Graph Cut Library

A library focusing on combinatorial optimization via graph cuts and its use in digital image analysis.

LOFM Measure

LOFMMeasure is an Icy plugin intended for computing a particle tracking accuracy measure based on matching linear oriented forests.