Installed Software Packages

Here is a list of complex software packages installed on our computers and offered to our registered users:

• MATLAB (Mathworks)

  • description: generic prototyping environment
  • modules: image processing, signal processing, wavelet processing, deep learning, parallel processing, diplib, dipimage
  • version: the lastest available
  • installation: all the servers (requires connection to the licence server)

• Imaris (Bitplane)

  • description: visualization software to segmentation and tracking tasks in biomedicine
  • modules: Imaris Core, Measurements, TrackLineage, XT, FLM (licence server)
  • version: 9.5.1
  • installation: any workstation in local network (requires connection to the licence server)

• SVI Huygens (SVI)

  • description: deconvolution software package
  • modules: Surface renderer, Colocalization analyzer, Object analyzer & colocalization, Confocal mode, Spinning disc mode, Widefiled & brightfield mode
  • version: 20.04
  • installation: Alfeios

• Fiji (imagej.net)

  • description: free software suitable for generic image processing tasks
  • installation: any server or any workstation